[]Module lumol::sim::md

Molecular dynamics algorithms.

Structs

AnisoBerendsenBarostat

Anisotropic Berendsen barostat integrator based on velocity-Verlet. This one neither reversible nor symplectic.

BerendsenBarostat

Berendsen barostat integrator based on velocity-Verlet. This one neither reversible nor symplectic.

BerendsenThermostat

Berendsen thermostat.

LeapFrog

Leap-frog integrator. This one is reversible and symplectic.

MolecularDynamics

Molecular Dynamics propagator for the simulation.

RemoveRotation

Remove global rotation from the system

RemoveTranslation

Remove global translation from the system

RescaleThermostat

Velocity rescaling thermostat.

Rewrap

Rewrap all molecules' centers of mass to lie within the unit cell. Individual atoms in a molecule may still lie outside of the cell.

VelocityVerlet

Velocity-Verlet integrator. This one is reversible and symplectic.

Verlet

Verlet integrator. This one is reversible and symplectic.

Traits

Control

Trait for controlling some parameters in a system during a simulation.

Integrator

The Integrator trait define integrator interface for molecular dynamics. An integrator is an algorithm responsible for propagating the equations of motion in the system.

Thermostat

Trait for controls usable as thermostats